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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs4911414 1 rs4911410 chr20:32710974 RALY chr20:32581732-32672675:+ 0.14 4.34 1.77E-5 Tanning;Skin sensitivity to sun;Red vs. non-red hair color;Freckles;Burning and freckling
THCA cis rs4911414 1 rs4911412 chr20:32716435 RALY chr20:32581732-32672675:+ 0.14 4.26 2.44E-5 Tanning;Skin sensitivity to sun;Red vs. non-red hair color;Freckles;Burning and freckling
THCA cis rs4911414 1 rs4911414 chr20:32729444 RALY chr20:32581732-32672675:+ 0.14 4.24 2.69E-5 Tanning;Skin sensitivity to sun;Red vs. non-red hair color;Freckles;Burning and freckling
THCA cis rs6088813 1 rs4911491 chr20:33947285 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs4911491 chr20:33947285 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs4911491 chr20:33947285 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs4911491 chr20:33947285 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height
THCA cis rs6088813 1 rs4911492 chr20:33951799 CEP250 chr20:34042996-34099802:+ -0.15 -3.38 0.000792 Height
THCA cis rs6088813 1 rs4911492 chr20:33951799 CPNE1 chr20:34213968-34262539:- 0.3 5.92 6.1E-9 Height
THCA cis rs6088813 1 rs4911492 chr20:33951799 GDF5 chr20:33897002-34042568:- -0.18 -3.82 0.000152 Height
THCA cis rs6088813 1 rs4911492 chr20:33951799 UQCC chr20:33890383-33999833:- 0.32 10.21 2.76E-22 Height
THCA cis rs6088813 1 rs4911494 chr20:33971914 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs4911494 chr20:33971914 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs4911494 chr20:33971914 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs4911494 chr20:33971914 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height